If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ), 'gf_id' => 'HOM05D000834', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000834' ), 'data_identifier' => 'HOM05D000834', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000834', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '714', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09260' => 'bna', 'A07p00360' => 'bna', 'A07p00370' => 'bna', 'A09p12830' => 'bna', 'A09p12840' => 'bna', 'A09p58940' => 'bna', 'Aa31LG2G21700' => 'aar', 'Aa31LG8G17330' => 'aar', 'Aa31LG8G17340' => 'aar', 'Aa31LG8G17350' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4122' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.182' => 'aag', 'Actinidia09509' => 'ach', 'Actinidia23703' => 'ach', 'Actinidia23704' => 'ach', 'Actinidia30121' => 'ach', 'Ah.01g014500' => 'amhyb', 'Ah.04g162680' => 'amhyb', 'Ah.05g171500' => 'amhyb', 'Ah.08g213640' => 'amhyb', 'AL3G53290' => 'aly', 'AL3G53320' => 'aly', 'AL7G23850' => 'aly', 'Aqoxy1G03925' => 'aox', 'Aqoxy1G03928' => 'aox', 'Aqoxy4G00024' => 'aox', 'Aqoxy5G00113' => 'aox', 'Aqoxy5G00122' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0LQ7B2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.24DU69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.78PZUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98D005' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6LIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8U20Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FV2UDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G250MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW5QP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZIC2A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3QM7Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX20RB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PC3CUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UCUK6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VNZ0ME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYWU3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJSZ6X' => 'arhy', 'AT2G20340' => 'ath', 'AT2G20360' => 'ath', 'AT4G28680' => 'ath', 'ATR0561G105' => 'atr', 'ATR0598G028' => 'atr', 'ATR0598G108' => 'atr', 'ATR0598G223' => 'atr', 'ATR0598G247' => 'atr', 'ATR0598G315' => 'atr', 'ATR0787G052' => 'atr', 'ATR0787G055' => 'atr', 'ATR1098G057' => 'atr', 'ATR1098G115' => 'atr', 'Atru.chr10.1045' => 'acertr', 'Atru.chr5.1869' => 'acertr', 'Atru.chr5.1961' => 'acertr', 'Atru.chr8.1556' => 'acertr', 'AUR62008805' => 'cqu', 'AUR62008810' => 'cqu', 'AUR62014902' => 'cqu', 'AUR62025133' => 'cqu', 'AUR62025155' => 'cqu', 'AUR62025157' => 'cqu', 'AUR62025428' => 'cqu', 'AUR62025434' => 'cqu', 'AUR62031110' => 'cqu', 'AUR62033716' => 'cqu', 'AUR62033719' => 'cqu', 'AUR62042693' => 'cqu', 'BcaB02g11316' => 'bca', 'BcaB03g16825' => 'bca', 'BcaB03g16826' => 'bca', 'BcaB03g16827' => 'bca', 'BcaB03g16828' => 'bca', 'BcaB07g31592' => 'bca', 'BcaB07g31595' => 'bca', 'BcaB07g31596' => 'bca', 'BcaB07g31597' => 'bca', 'BcaB08g34904' => 'bca', 'BcaC04g22796' => 'bca', 'BcaC04g22801' => 'bca', 'BcaC04g22802' => 'bca', 'BcaC06g36720' => 'bca', 'BcaC06g36722' => 'bca', 'BcaC06g36723' => 'bca', 'BcaC07g41219' => 'bca', 'BcaC07g41220' => 'bca', 'BcaNung01379' => 'bca', 'BcaNung04698' => 'bca', 'BcaNung06061' => 'bca', 'BolC1t01049H' => 'bol', 'BolC7t40517H' => 'bol', 'BolC8t51785H' => 'bol', 'BolC9t54426H' => 'bol', 'BolC9t54430H' => 'bol', 'BraA01t00870Z' => 'bra', 'BraA07t27827Z' => 'bra', 'BraA07t27828Z' => 'bra', 'BraA07t27829Z' => 'bra', 'BraA09t36926Z' => 'bra', 'BraA09t36929Z' => 'bra', 'BraA09t36931Z' => 'bra', 'BraA09t41279Z' => 'bra', 'BraA09t41280Z' => 'bra', 'C01p10840' => 'bna', 'C07p00720' => 'bna', 'C07p00740' => 'bna', 'C08p42260' => 'bna', 'C09p15230' => 'bna', 'CAN.G1141.4' => 'can', 'CAN.G1141.5' => 'can', 'CAN.G1622.2' => 'can', 'CAN.G248.25' => 'can', 'CAN.G536.3' => 'can', 'CAN.G637.70' => 'can', 'CAN.G852.6' => 'can', 'CANSAT01G0496' => 'cansat', 'CANSAT01G1591' => 'cansat', 'CANSAT01G2734' => 'cansat', 'CANSAT11G0014' => 'cansat', 'CANSAT11G0642' => 'cansat', 'CANSAT35G1046' => 'cansat', 'CANSAT64G2349' => 'cansat', 'CANSAT78G0440' => 'cansat', 'CANSAT78G0478' => 'cansat', 'CANSAT78G0820' => 'cansat', 'CANSAT78G1461' => 'cansat', 'CANSAT78G1601' => 'cansat', 'CANSAT78G1847' => 'cansat', 'CANSAT78G2188' => 'cansat', 'CARHR110870' => 'chi', 'CARHR110880' => 'chi', 'Carub.0003s3468' => 'cru', 'Carub.0003s3469' => 'cru', 'Carub.0003s3470' => 'cru', 'Carub.0003s3474' => 'cru', 'Carub.0007s1198' => 'cru', 'Ca_08750_v3' => 'car', 'Ca_09644_v3' => 'car', 'Ca_23576_v3' => 'car', 'Ca_23585_v3' => 'car', 'CBR_g12802' => 'cbr', 'CBR_g36295' => 'cbr', 'Cc00_g21470' => 'ccan', 'Cc00_g35290' => 'ccan', 'Cc01_g17720' => 'ccan', 'Cc01_g17740' => 'ccan', 'Cc05_g04740' => 'ccan', 'Cc05_g04750' => 'ccan', 'Cc09_g08440' => 'ccan', 'Cc09_g08450' => 'ccan', 'Cc11_g06290' => 'ccan', 'CDE01G0216' => 'cde', 'CDE01G0726' => 'cde', 'CDE01G0756' => 'cde', 'CDE02G0223' => 'cde', 'CDE02G1088' => 'cde', 'CDE02G2585' => 'cde', 'CDE03G0381' => 'cde', 'CDE08G0875' => 'cde', 'CDE08G1690' => 'cde', 'CDE09G1390' => 'cde', 'CDE11G0235' => 'cde', 'CDE11G0614' => 'cde', 'CDE11G0662' => 'cde', 'CDE11G1062' => 'cde', 'Cfa000878' => 'cfa', 'Cfa000879' => 'cfa', 'Cfa000880' => 'cfa', 'Cfa001007' => 'cfa', 'Cfa001921' => 'cfa', 'Cfa002491' => 'cfa', 'Cfa002492' => 'cfa', 'Cfa014507' => 'cfa', 'Cfa023707' => 'cfa', 'Cfa024023' => 'cfa', 'Ciclev10000723m.g' => 'ccl', 'Ciclev10014992m.g' => 'ccl', 'Ciclev10018100m.g' => 'ccl', 'Ciclev10018301m.g' => 'ccl', 'Ciclev10020464m.g' => 'ccl', 'Ciclev10020518m.g' => 'ccl', 'Ciclev10025359m.g' => 'ccl', 'Ciclev10025447m.g' => 'ccl', 'Ciclev10025789m.g' => 'ccl', 'Ciclev10027405m.g' => 'ccl', 'Ciclev10031252m.g' => 'ccl', 'Ciclev10033968m.g' => 'ccl', 'CiPaw.03G271600' => 'cil', 'CiPaw.03G271800' => 'cil', 'CiPaw.04G122000' => 'cil', 'CiPaw.05G147100' => 'cil', 'CiPaw.09G118200' => 'cil', 'CiPaw.09G118300' => 'cil', 'CiPaw.09G118400' => 'cil', 'CiPaw.09G118600' => 'cil', 'CiPaw.10G088000' => 'cil', 'CiPaw.10G088100' => 'cil', 'CiPaw.10G088300' => 'cil', 'ClCG00G001610' => 'cla', 'ClCG03G006460' => 'cla', 'ClCG06G001380' => 'cla', 'ClCG07G001440' => 'cla', 'COL.COLO4_02902' => 'col', 'COL.COLO4_03817' => 'col', 'COL.COLO4_06547' => 'col', 'COL.COLO4_17658' => 'col', 'COL.COLO4_17659' => 'col', 'COL.COLO4_20375' => 'col', 'COL.COLO4_20549' => 'col', 'COL.COLO4_20946' => 'col', 'Cpa.g.c28458' => 'cpa', 'Cpa.g.sc34.65' => 'cpa', 'Cpa.g.sc51.70' => 'cpa', 'Cpa.g.sc87.39' => 'cpa', 'Cpa.g.sc87.42' => 'cpa', 'Cre01.g028423' => 'cre', 'Cre10.g434450' => 'cre', 'CsaV3_1G036910' => 'csa', 'CsaV3_3G028450' => 'csa', 'CsaV3_6G007320' => 'csa', 'CSS0005533' => 'camsi', 'CSS0011637' => 'camsi', 'CSS0024717' => 'camsi', 'CSS0030223' => 'camsi', 'CSS0037788' => 'camsi', 'CSS0041725' => 'camsi', 'CSS0047996' => 'camsi', 'CSS0049040' => 'camsi', 'CSS0049955' => 'camsi', 'CSS0050145' => 'camsi', 'DCAR_000572' => 'dca', 'DCAR_003323' => 'dca', 'DCAR_004124' => 'dca', 'DCAR_004694' => 'dca', 'DCAR_007864' => 'dca', 'DCAR_007865' => 'dca', 'DCAR_011881' => 'dca', 'DCAR_011882' => 'dca', 'DCAR_011883' => 'dca', 'Dinv13839' => 'din', 'Dinv15507' => 'din', 'Dinv15508' => 'din', 'Dinv19263' => 'din', 'Dinv21501' => 'din', 'Dinv32205' => 'din', 'Dinv32206' => 'din', 'Dinv41227' => 'din', 'Dinv43059' => 'din', 'Dinv43063' => 'din', 'Dinv43064' => 'din', 'Duzib078G0001' => 'dzi', 'Duzib106G1314' => 'dzi', 'Duzib128G2039' => 'dzi', 'Duzib138G0050' => 'dzi', 'Duzib138G0149' => 'dzi', 'Duzib138G0529' => 'dzi', 'Duzib138G0985' => 'dzi', 'Duzib138G1657' => 'dzi', 'Duzib248G1452' => 'dzi', 'ECA233G4083' => 'eca', 'ECA236G5100' => 'eca', 'ECA248G0591' => 'eca', 'EL10Ac2g04274' => 'bvu', 'EL10Ac7g17699' => 'bvu', 'EL10Ac8g18268' => 'bvu', 'EL10Ac8g20463' => 'bvu', 'EL10Ac9g20649' => 'bvu', 'Eucgr.A01770' => 'egr', 'Eucgr.E01787' => 'egr', 'Eucgr.E01788' => 'egr', 'Eucgr.E01820' => 'egr', 'Eucgr.E02456' => 'egr', 'Eucgr.E02458' => 'egr', 'Eucgr.E02461' => 'egr', 'Eucgr.K01417' => 'egr', 'Eucgr.K01418' => 'egr', 'Eucgr.K01422' => 'egr', 'FAN11G0253' => 'fan', 'FAN11G3252' => 'fan', 'FAN15G3585' => 'fan', 'FAN15G3760' => 'fan', 'FAN16G3649' => 'fan', 'FAN20G1312' => 'fan', 'FAN20G1911' => 'fan', 'FAN24G3103' => 'fan', 'FAN24G3261' => 'fan', 'FAN27G0744' => 'fan', 'FAN27G1114' => 'fan', 'FAN27G2923' => 'fan', 'FvH4_2g15330' => 'fve', 'FvH4_2g15360' => 'fve', 'FvH4_2g16470' => 'fve', 'FvH4_2g20320' => 'fve', 'FvH4_2g20370' => 'fve', 'FvH4_3g09470' => 'fve', 'FvH4_3g09472' => 'fve', 'FvH4_3g09540' => 'fve', 'Glyma.03G167900' => 'gma', 'Glyma.07G059000' => 'gma', 'Glyma.09G021700' => 'gma', 'Glyma.13G127400' => 'gma', 'Glyma.15G128000' => 'gma', 'Gohir.A01G013800' => 'ghi', 'Gohir.A01G013900' => 'ghi', 'Gohir.A07G072000' => 'ghi', 'Gohir.A07G153200' => 'ghi', 'Gohir.A10G181350' => 'ghi', 'Gohir.A10G181375' => 'ghi', 'Gohir.A11G133900' => 'ghi', 'Gohir.A13G077301' => 'ghi', 'Gohir.A13G162914' => 'ghi', 'Gohir.A13G163000' => 'ghi', 'Gohir.D01G015200' => 'ghi', 'Gohir.D07G076200' => 'ghi', 'Gohir.D07G159400' => 'ghi', 'Gohir.D10G188200' => 'ghi', 'Gohir.D10G188350' => 'ghi', 'Gohir.D11G140000' => 'ghi', 'Gohir.D13G170800' => 'ghi', 'Gorai.001G080700' => 'gra', 'Gorai.001G182500' => 'gra', 'Gorai.002G016900' => 'gra', 'Gorai.007G150200' => 'gra', 'Gorai.011G211000' => 'gra', 'Gorai.011G211200' => 'gra', 'Gorai.013G190100' => 'gra', 'Gorai.013G190700' => 'gra', 'GSVIVG01000454001' => 'vvi', 'GSVIVG01021569001' => 'vvi', 'GSVIVG01021573001' => 'vvi', 'GSVIVG01026378001' => 'vvi', 'GSVIVG01026384001' => 'vvi', 'GSVIVG01026388001' => 'vvi', 'GSVIVG01028438001' => 'vvi', 'GSVIVG01028441001' => 'vvi', 'GSVIVG01035401001' => 'vvi', 'HanXRQChr01g0014941' => 'han', 'HanXRQChr01g0022801' => 'han', 'HanXRQChr01g0029481' => 'han', 'HanXRQChr01g0030951' => 'han', 'HanXRQChr04g0118371' => 'han', 'HanXRQChr13g0397531' => 'han', 'HanXRQChr15g0497541' => 'han', 'HanXRQChr15g0497551' => 'han', 'HanXRQChr17g0535051' => 'han', 'HanXRQChr17g0535061' => 'han', 'HanXRQChr17g0535071' => 'han', 'Haze_05706' => 'cav', 'Haze_05709' => 'cav', 'Haze_05710' => 'cav', 'Haze_05711' => 'cav', 'Haze_13052' => 'cav', 'Haze_24714' => 'cav', 'Haze_24716' => 'cav', 'Haze_26682' => 'cav', 'Hma1.2p1_0586F.1_g183750' => 'hma', 'Hma1.2p1_0689F.1_g203820' => 'hma', 'Hma1.2p1_0689F.1_g203830' => 'hma', 'Hma1.2p1_0876F.1_g231583' => 'hma', 'Hma1.2p1_0876F.1_g231586' => 'hma', 'Hma1.2p1_3608F.1_g337010' => 'hma', 'HPP92_008593' => 'vpl', 'HPP92_019504' => 'vpl', 'HPP92_020769' => 'vpl', 'Hund05490' => 'sun', 'Hund05493' => 'sun', 'Lalb_Chr02g0152761' => 'lal', 'Lalb_Chr06g0170741' => 'lal', 'Lalb_Chr17g0342291' => 'lal', 'Lalb_Chr20g0113521' => 'lal', 'Lj1C74T17' => 'lonja', 'Lj1P738T9' => 'lonja', 'Lj2C1141T9' => 'lonja', 'Lj2P323T47' => 'lonja', 'Lj2P324T14' => 'lonja', 'Lj2P324T20' => 'lonja', 'Lj3g0026391' => 'lja', 'Lj5g0006902' => 'lja', 'Lj6g0010206' => 'lja', 'Lsat_1_v5_gn_2_2800' => 'lsa', 'Lsat_1_v5_gn_4_140101' => 'lsa', 'Lsat_1_v5_gn_4_140160' => 'lsa', 'Lsat_1_v5_gn_4_140200' => 'lsa', 'Lsat_1_v5_gn_5_181020' => 'lsa', 'Lsat_1_v5_gn_5_181100' => 'lsa', 'Lsat_1_v5_gn_7_30341' => 'lsa', 'Lsat_1_v5_gn_7_90061' => 'lsa', 'Lsat_1_v5_gn_8_148040' => 'lsa', 'Lsat_1_v5_gn_9_116700' => 'lsa', 'Lsat_1_v5_gn_9_70560' => 'lsa', 'Lsat_1_v5_gn_9_97761' => 'lsa', 'Manes.12G038400' => 'mes', 'Manes.12G038600' => 'mes', 'Manes.12G079500' => 'mes', 'Manes.13G039100' => 'mes', 'Mapoly0049s0042' => 'mpo', 'Mapoly0051s0097' => 'mpo', 'Mapoly0057s0014' => 'mpo', 'MBI02_g07196_MAGBIO' => 'mbi', 'MBI02_g39752_MAGBIO' => 'mbi', 'MBI02_g39753_MAGBIO' => 'mbi', 'MBI02_g43406_MAGBIO' => 'mbi', 'MBI02_g43407_MAGBIO' => 'mbi', 'MBI07_g22384_MAGBIO' => 'mbi', 'MBI10_g16790_MAGBIO' => 'mbi', 'MBI18_g10592_MAGBIO' => 'mbi', 'MBI18_g26294_MAGBIO' => 'mbi', 'MCO13G055' => 'mco', 'MD01G1040200' => 'mdo', 'MD05G1187700' => 'mdo', 'MD10G1175100' => 'mdo', 'MD10G1175400' => 'mdo', 'MD10G1256600' => 'mdo', 'MD10G1256800' => 'mdo', 'MD10G1256900' => 'mdo', 'MD15G1374200' => 'mdo', 'Medtr1g069455' => 'mtr', 'Medtr2g029430' => 'mtr', 'Medtr2g029450' => 'mtr', 'Medtr7g058700' => 'mtr', 'Medtr7g098700' => 'mtr', 'Medtr7g098730' => 'mtr', 'Medtr8g028060' => 'mtr', 'MELO3C002775.2' => 'cme', 'MELO3C012835.2' => 'cme', 'MELO3C022394.2' => 'cme', 'Migut.D00483' => 'egut', 'Migut.D00485' => 'egut', 'Migut.M01868' => 'egut', 'Migut.M01894' => 'egut', 'MSTRG.14785' => 'ama', 'MSTRG.18357' => 'ama', 'MSTRG.18359' => 'ama', 'MSTRG.7522' => 'ama', 'Nitab4.5_0000385g0020' => 'nta', 'Nitab4.5_0000385g0040' => 'nta', 'Nitab4.5_0000392g0120' => 'nta', 'Nitab4.5_0000717g0040' => 'nta', 'Nitab4.5_0000769g0120' => 'nta', 'Nitab4.5_0001595g0020' => 'nta', 'Nitab4.5_0002435g0060' => 'nta', 'Nitab4.5_0002900g0010' => 'nta', 'Nitab4.5_0003060g0010' => 'nta', 'Nitab4.5_0004109g0020' => 'nta', 'Nn1g03003' => 'nnu', 'Nn1g03833' => 'nnu', 'Nn1g04733' => 'nnu', 'Nn1g05537' => 'nnu', 'Nn2g11038' => 'nnu', 'Nn3g16749' => 'nnu', 'Nn3g19056' => 'nnu', 'Nn3g19057' => 'nnu', 'Nn3g19396' => 'nnu', 'Nn3g19814' => 'nnu', 'Nn3g21319' => 'nnu', 'Nn4g26644' => 'nnu', 'Nn5g30985' => 'nnu', 'Nn5g30986' => 'nnu', 'Nn6g32285' => 'nnu', 'Nn6g33557' => 'nnu', 'Nn7g36441' => 'nnu', 'Nn7g36600' => 'nnu', 'Nn7g36601' => 'nnu', 'Nn7g36820' => 'nnu', 'Nn7g38447' => 'nnu', 'Oeu015200.1' => 'oeu', 'Oeu015201.1' => 'oeu', 'Oeu031323.1' => 'oeu', 'Oeu052085.1' => 'oeu', 'Oeu052088.1' => 'oeu', 'Os01g0770200' => 'osa', 'Os02g0816800' => 'osa', 'Os05g0510600' => 'osa', 'Os07g0437500' => 'osa', 'Os08g0140300' => 'osa', 'Os08g0140500' => 'osa', 'Os10g0380800' => 'osa', 'Os10g0400500' => 'osa', 'Peaxi162Scf00007g10222' => 'pax', 'Peaxi162Scf00043g00251' => 'pax', 'Peaxi162Scf00043g02312' => 'pax', 'Peaxi162Scf00152g00237' => 'pax', 'Peaxi162Scf00152g00238' => 'pax', 'Peaxi162Scf00432g00053' => 'pax', 'Peaxi162Scf00432g00054' => 'pax', 'Peaxi162Scf00465g00015' => 'pax', 'Peaxi162Scf00561g00021' => 'pax', 'Peaxi162Scf00561g00025' => 'pax', 'Peaxi162Scf01038g00146' => 'pax', 'PGR031G3015' => 'pgr', 'PGR042G2364' => 'pgr', 'PGR044G1351' => 'pgr', 'PGR044G1996' => 'pgr', 'PGSC0003DMG400005443' => 'stu', 'PGSC0003DMG400005444' => 'stu', 'PGSC0003DMG400008575' => 'stu', 'PGSC0003DMG400014052' => 'stu', 'PGSC0003DMG400014863' => 'stu', 'PGSC0003DMG400018357' => 'stu', 'PGSC0003DMG400018358' => 'stu', 'PGSC0003DMG400018359' => 'stu', 'PGSC0003DMG400024278' => 'stu', 'PGSC0003DMG400035067' => 'stu', 'PGSC0003DMG400042679' => 'stu', 'Phvul.001G165600' => 'pvu', 'Phvul.006G130611' => 'pvu', 'Phvul.007G153700' => 'pvu', 'Potri.002G255600' => 'ptr', 'Potri.002G255900' => 'ptr', 'Potri.004G036200' => 'ptr', 'Potri.013G052800' => 'ptr', 'Potri.013G052900' => 'ptr', 'Potri.014G193300' => 'ptr', 'Potri.016G114300' => 'ptr', 'Pp3c14_9070' => 'ppa', 'Pp3c1_35920' => 'ppa', 'Pp3c4_30790' => 'ppa', 'Pp3c4_30870' => 'ppa', 'Pp3c4_30950' => 'ppa', 'Pp3s64_90' => 'ppa', 'PRCOL_00004980' => 'pco', 'PRCOL_00005891' => 'pco', 'Prupe.3G228200' => 'ppe', 'Prupe.4G086600' => 'ppe', 'Prupe.4G086700' => 'ppe', 'Prupe.4G086900' => 'ppe', 'Prupe.4G087100' => 'ppe', 'Prupe.6G202600' => 'ppe', 'Prupe.8G214500' => 'ppe', 'Prupe.8G214700' => 'ppe', 'Psat3g057520' => 'psa', 'Psat3g057560' => 'psa', 'Psat4g158680' => 'psa', 'Psat6g062480' => 'psa', 'PSO017G1633' => 'pso', 'PSO017G6383' => 'pso', 'PSO040G0035' => 'pso', 'PSO063G2797' => 'pso', 'PSO063G2800' => 'pso', 'PSO063G4724' => 'pso', 'PSO170G2129' => 'pso', 'PSO170G6581' => 'pso', 'PSO210G0126' => 'pso', 'PSO210G3127' => 'pso', 'PSO210G3941' => 'pso', 'PSO210G4389' => 'pso', 'PSO210G6983' => 'pso', 'PSO386G0243' => 'pso', 'PSO423G0121' => 'pso', 'PSO478G0653' => 'pso', 'PSO541G0290' => 'pso', 'PSO541G1236' => 'pso', 'PSO541G1269' => 'pso', 'PSO541G1963' => 'pso', 'PSO541G2348' => 'pso', 'PSO541G3816' => 'pso', 'PSO675G1152' => 'pso', 'PSO675G7065' => 'pso', 'PSO675G9134' => 'pso', 'PSO764G0197' => 'pso', 'PSO781G0023' => 'pso', 'PSO781G0073' => 'pso', 'PSO781G0131' => 'pso', 'PSO781G0226' => 'pso', 'PSO781G0230' => 'pso', 'PSO832G0581' => 'pso', 'PSO832G1039' => 'pso', 'PSO832G2974' => 'pso', 'QL04p048531' => 'qlo', 'QL05p019156' => 'qlo', 'QL05p054444' => 'qlo', 'QL05p054481' => 'qlo', 'QL05p054584' => 'qlo', 'QL05p054932' => 'qlo', 'QL05p086068' => 'qlo', 'QL05p087102' => 'qlo', 'QL05p087142' => 'qlo', 'QL05p087171' => 'qlo', 'QL07p013913' => 'qlo', 'QL07p013979' => 'qlo', 'QL08p036626' => 'qlo', 'QL09p041638' => 'qlo', 'QL09p042078' => 'qlo', 'QL11p011578' => 'qlo', 'RcHm_v2.0_Chr1g0324861' => 'rch', 'RcHm_v2.0_Chr5g0015041' => 'rch', 'RcHm_v2.0_Chr5g0015051' => 'rch', 'RcHm_v2.0_Chr6g0247151' => 'rch', 'RcHm_v2.0_Chr6g0286451' => 'rch', 'RcHm_v2.0_Chr6g0286481' => 'rch', 'Rhsim01G0259700' => 'rsi', 'Rhsim01G0259900' => 'rsi', 'Sabra02G0194500' => 'sbr', 'Sabra13G0047500' => 'sbr', 'Sabra13G0047600' => 'sbr', 'Sabra13G0047900' => 'sbr', 'Sabra19G0134900' => 'sbr', 'SalBow4G1359' => 'sbo', 'SalBow4G2876' => 'sbo', 'SalBow6G5988' => 'sbo', 'SalBow7G0708' => 'sbo', 'SalBow7G4244' => 'sbo', 'SalBow8G4675' => 'sbo', 'SalBow8G5189' => 'sbo', 'Sc05g0002630' => 'sci', 'Sc05g0002650' => 'sci', 'Sc05g0002670' => 'sci', 'Sc05g0002810' => 'sci', 'Sc05g0002830' => 'sci', 'Sc05g0002850' => 'sci', 'Sc21g0001500' => 'sci', 'Sc21g0001550' => 'sci', 'Sc21g0001560' => 'sci', 'Sc21g0001690' => 'sci', 'Sc21g0002190' => 'sci', 'Sed0014939' => 'sed', 'Sed0016721' => 'sed', 'Sed0016775' => 'sed', 'Sed0018887' => 'sed', 'Sed0021345' => 'sed', 'SEGI_02409' => 'sgi', 'SEGI_11456' => 'sgi', 'SEGI_17509' => 'sgi', 'SEGI_20632' => 'sgi', 'SEGI_21498' => 'sgi', 'SEGI_22083' => 'sgi', 'SEGI_25784' => 'sgi', 'SEGI_37171' => 'sgi', 'SEGI_38410' => 'sgi', 'SEGI_39366' => 'sgi', 'SGA_v2.0_scaffold1G00668' => 'sas', 'SHI10485' => 'shi', 'SHI26740' => 'shi', 'SHI26743' => 'shi', 'SMO119G0337' => 'smo', 'SMO119G0351' => 'smo', 'SMO119G0438' => 'smo', 'SMO270G0047' => 'smo', 'SMO306G0026' => 'smo', 'SMO351G0613' => 'smo', 'SMO361G0278' => 'smo', 'SMO361G0778' => 'smo', 'Solyc03g044120.1' => 'sly', 'Solyc03g045010.1' => 'sly', 'Solyc03g045020.4' => 'sly', 'Solyc07g054280.1' => 'sly', 'Solyc07g054860.1' => 'sly', 'Solyc09g064430.4' => 'sly', 'Solyc09g064450.3' => 'sly', 'Sopen03g008010' => 'spe', 'Sopen03g009450' => 'spe', 'Sopen07g028220' => 'spe', 'Sopen07g028770' => 'spe', 'Sopen08g008130' => 'spe', 'Sopen09g025560' => 'spe', 'Sopen09g025590' => 'spe', 'Sp3g33580' => 'spa', 'Sp3g33600' => 'spa', 'Sp7g26650' => 'spa', 'TAR362G0351' => 'tar', 'TAR365G0868' => 'tar', 'TAR626G1928' => 'tar', 'TAR627G0824' => 'tar', 'TAR629G0150' => 'tar', 'TAR629G3513' => 'tar', 'TAR633G2436' => 'tar', 'THA.LOC104804035' => 'tha', 'THA.LOC104814534' => 'tha', 'THA.LOC104820066' => 'tha', 'THA.LOC104820067' => 'tha', 'Thecc.01G248800' => 'tca', 'Thecc.01G249300' => 'tca', 'Thecc.02G009500' => 'tca', 'Thecc.02G009600' => 'tca', 'Thecc.02G168600' => 'tca', 'Thecc.05G260300' => 'tca', 'Thecc.05G260400' => 'tca', 'Thecc.05G260500' => 'tca', 'Thhalv10001969m.g' => 'esa', 'Thhalv10002002m.g' => 'esa', 'Thhalv10011066m.g' => 'esa', 'TPR.G20080' => 'tpr', 'TPR.G26541' => 'tpr', 'TPR.G5902' => 'tpr', 'TWI12G0869' => 'twi', 'TWI53G0753' => 'twi', 'TWI53G1031' => 'twi', 'TWI53G1572' => 'twi', 'unitig_22.g6307' => 'ugi', 'unitig_60.g25948' => 'ugi', 'unitig_748.g7675' => 'ugi', 'vmacro08768' => 'vma', 'vmacro08769' => 'vma', 'vmacro14790' => 'vma', 'vmacro14792' => 'vma', 'vmacro21964' => 'vma', 'VMungo0540G2180' => 'vmu', 'VMungo0720G2048' => 'vmu', 'VMungo1383G0133' => 'vmu', 'Zm00001eb006420' => 'zma', 'Zm00001eb006440' => 'zma', 'Zm00001eb048560' => 'zma', 'Zm00001eb166090' => 'zma', 'Zm00001eb173020' => 'zma', 'Zm00001eb258880' => 'zma', 'Zm00001eb292480' => 'zma', 'Zm00001eb416690' => 'zma', 'Zm00001eb416700' => 'zma' ) $gf_id = 'HOM05D000834' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000834' ) $data_identifier = 'HOM05D000834' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 3, 'atr' => (int) 10, 'acertr' => (int) 4, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 5, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 14, 'chi' => (int) 2, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 9, 'cde' => (int) 14, 'cfa' => (int) 10, 'ccl' => (int) 12, 'cil' => (int) 11, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 3, 'bvu' => (int) 5, 'egr' => (int) 10, 'fan' => (int) 12, 'fve' => (int) 8, 'gma' => (int) 5, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 2, 'lal' => (int) 4, 'lonja' => (int) 6, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 21, 'oeu' => (int) 5, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 4, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 7, 'ppa' => (int) 6, 'pco' => (int) 2, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 34, 'qlo' => (int) 16, 'rch' => (int) 6, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 11, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 1, 'shi' => (int) 3, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 4, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416700' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1